This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0002GVP.2

Display Name: Guinea/LOC_0002GVP.2/2024-12-12
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, M. Y. Kartashov, A. V. Shipovalov, A. B. Ibrahim, E. A. Basov, A. P. Smolina, N. P. Guseva, T. A. Polunina, N. V. Kotova, S. D. Katyshev, S. Boumbaly & M. S. Traore

Sample details

Collection date
2024-12-12
Collection date (lower bound)
2024-12-12
Collection date (upper bound)
2024-12-12
Earliest release date
2025-08-09
Collection country
Guinea

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-18 15:21insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Russian Antiplague Research Institute 'Microbe', Microbiology

INSDC

NCBI release date
2025-08-09
INSDC accession L
INSDC accession M
INSDC accession S

Host

Host taxon id
Host name scientific
Amblyomma variegatum

Sequencing

Sequencing instrument
asdf

Alignment and QC metrics M

Length M
2912
Total SNPs M
239
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
1253
Total frame shifts M
0
Completeness M
30.92%
Total stop codons M
0

Alignment and QC metrics S

Length S
1654
Total SNPs S
147
Total inserted nucs S
1
Total deleted nucs S
2
Total ambiguous nucs S
0
Total unknown nucs S
206
Total frame shifts S
0
Completeness S
86.66%
Total stop codons S
0

Submission details

Submission ID
PV987607.1.L/PV987599.1.M/PV987591.1.S
Version comment
comment
Submitting group
Date submitted
2025-12-18 15:33:05 UTC
Date released
2025-12-18 15:33:36 UTC

Lineage

Segment S Lineage
V

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:A1577T
  • M:T1586A
  • M:T1587C
  • M:G1589A
  • M:G1592A
  • M:G1595A
  • M:G1604A
  • M:A1607G
  • M:A1628C
  • M:A1629C
  • M:C1631T
  • M:C1634T
  • M:T1637C
  • M:T1644C
  • M:T1649G
  • M:A1652C
  • M:A1655G
  • M:A1658G

    • S

  • S:C14A
  • S:G20T
  • S:G54A
  • S:G134A
  • S:C142T
  • S:C166T
  • S:C178A
  • S:T182C
  • S:G189A
  • S:C244T
  • S:G262A
  • S:A268C
  • S:G271A
  • S:C295T
  • S:A298T
  • S:C310T
  • S:A325G
  • S:T364C
    • Deletions
    S:1531, S:1532
    Insertions
    ins_S:1579:C

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:T513P
  • GPC:P523S
  • GPC:S524D
  • GPC:D525G
  • GPC:I541V
  • GPC:G543N
  • GPC:V578I
  • GPC:R579K
  • GPC:T589S
  • GPC:G590E
  • GPC:N592P
  • GPC:V598T
  • GPC:K601E
  • GPC:Y606F
  • GPC:R609K
  • GPC:V626I
  • GPC:T633S
  • GPC:K669N

    • NP

  • NP:G125N
  • NP:H195R
  • NP:I246V
  • NP:R270K
  • NP:S301G
  • NP:V436I
  • NP:T439K
    • Deletions
    None
    Insertions
    None

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