This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Enterovirus
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Enterovirus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_001DJME.1
Download
Download FASTA
Download metadata TSV
Display Name: China/LOC_001DJME.1/2024-09
Y. Y. Zhou,
X. J. Zhang,
J. Y. Lin,
Y. Zhu,
R. J. Lu,
W. J. Tan &
J. Shen
Sample details
Collection date
2024-09
Collection date (lower bound)
2024-09-01
Collection date (upper bound)
2024-09-30
Earliest release date
2024-12-21
Collection country
China
Collection subdivision level 1
Shanghai
Isolate name
SH2024-21182
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-12-18 15:44
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Children's Hospital of Fudan University, Infectious Disease Department
INSDC
NCBI release date
2024-12-21
NCBI update date
2024-12-21
INSDC accession
PQ766584.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics
Length
7391
Total SNPs
947
Total inserted nucs
50
Total deleted nucs
26
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
100.00%
Total stop codons
0
Submission details
Submission ID
PQ766584.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-18 15:44:26 UTC
Date released
2025-12-18 15:59:38 UTC
Clade
Clade EV-D68
A2/D
Genotype
Genotype
EV-D68
Nucleotide mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
T
11
C
C
12
T
T
28
C
C
62
T
A
88
T
T
89
C
C
101
T
T
118
C
C
156
T
T
157
C
A
159
G
C
168
T
T
172
C
C
177
T
T
187
C
C
203
T
A
232
T
T
262
C
Show more
Deletions
677-699, 2806-2808
Insertions
ins_26:C, ins_3303:ATCCGG, ins_7367:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Amino acid mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
2A
2A:
I
22
T
2A:
V
37
I
2A:
R
67
K
2A:
I
71
V
2A:
E
74
D
2A:
V
144
A
2B
2B:
N
23
S
2B:
L
38
I
2B:
I
64
V
2C
2C:
N
30
S
2C:
T
34
N
2C:
K
58
S
2C:
R
72
Q
2C:
R
88
K
2C:
V
96
M
2C:
S
98
A
2C:
A
102
T
2C:
I
154
V
2C:
N
273
D
2C:
T
275
A
2C:
V
304
I
2C:
T
317
I
3A
3A:
V
12
I
3A:
A
13
T
3A:
I
68
V
3C
3C:
V
30
I
3C:
Y
31
H
3C:
R
55
K
3C:
C
93
Y
3D
3D:
M
11
V
3D:
V
29
I
3D:
D
49
N
3D:
V
88
T
3D:
N
95
S
3D:
E
101
D
3D:
R
132
K
3D:
K
139
R
3D:
I
212
V
3D:
I
261
V
3D:
V
277
I
3D:
I
278
V
3D:
K
307
R
3D:
V
349
L
3D:
I
360
V
VP1
VP1:
S
1
L
VP1:
N
2
E
VP1:
G
6
E
VP1:
V
13
I
VP1:
T
46
S
VP1:
G
76
S
VP1:
K
84
R
VP1:
A
92
T
VP1:
S
95
G
VP1:
A
96
E
VP1:
G
97
R
VP1:
T
98
I
VP1:
H
99
D
VP1:
F
103
Y
VP1:
N
142
S
VP1:
D
144
N
VP1:
M
148
T
VP1:
K
168
E
Show more
VP2
VP2:
S
59
A
VP2:
R
67
K
VP2:
S
73
A
VP2:
N
74
E
VP2:
T
76
K
VP2:
D
136
N
VP2:
R
151
E
VP2:
I
167
L
VP2:
V
195
A
VP2:
M
222
V
VP2:
V
225
M
VP2:
T
247
A
VP3
VP3:
I
40
V
VP3:
M
46
V
VP3:
D
59
E
VP3:
N
62
D
VP3:
E
65
Q
VP3:
R
68
K
VP3:
Q
74
L
VP3:
A
75
T
VP3:
L
77
V
VP3:
I
163
V
VP3:
S
180
N
VP3:
S
204
N
VP3:
D
208
N
VP3:
I
216
V
Deletions
VP1:140
Insertions
ins_VP1:306:RL
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue