This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DJPA.1

Display Name: China/LOC_001DJPA.1/2024-11
Y. Y. Zhou, X. J. Zhang, J. Y. Lin, Y. Zhu, R. J. Lu, W. J. Tan & J. Shen

Sample details

Collection date
2024-11
Collection date (lower bound)
2024-11-01
Collection date (upper bound)
2024-11-30
Earliest release date
2024-12-21
Collection country
China
Collection subdivision level 1
Shanghai
Isolate name
SH2024-25087

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-18 15:44insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Children's Hospital of Fudan University, Infectious Disease Department

INSDC

NCBI release date
2024-12-21
NCBI update date
2024-12-21
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
1047
Total SNPs
155
Total inserted nucs
6
Total deleted nucs
3
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
14.17%
Total stop codons
0

Submission details

Submission ID
PQ766593.1
Submitting group
Date submitted
2025-12-18 15:44:26 UTC
Date released
2025-12-18 15:59:38 UTC

Clade

Clade EV-D68
A2/D

Genotype

Genotype
EV-D68

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • A2329G
  • A2331G
  • A2367G
  • A2376T
  • T2379C
  • T2382C
  • A2385G
  • A2388G
  • T2389C
  • C2390T
  • A2392G
  • C2394A
  • C2397T
  • G2405A
  • A2406G
  • T2421C
  • G2425A
  • G2427T
    • Deletions
    2806-2808
    Insertions
    ins_3303:ATCCGG

    Amino acid mutations

    Mutations called relative to the AY426531.1 reference

    Substitutions

    VP1

  • VP1:S1L
  • VP1:N2E
  • VP1:G6E
  • VP1:V13I
  • VP1:T46S
  • VP1:G76S
  • VP1:K84R
  • VP1:A92T
  • VP1:S95G
  • VP1:A96E
  • VP1:G97R
  • VP1:T98I
  • VP1:H99D
  • VP1:F103Y
  • VP1:N142S
  • VP1:D144N
  • VP1:M148T
  • VP1:K168E

    • VP3

  • VP3:I216V
    • Deletions
    VP1:140
    Insertions
    ins_VP1:306:RL

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